Hands-on Training in Oxford Nanopore Sequencing for Metagenomic Applications (3CME hours-in person)

Instructor: Dr. Liliane Alshareef & Mr. Ali Yasser

Format: In-person |Day:12 /10/2026 |Time: 9am-1pm 

Limited Seats Available – Register Early!

Purpose: Master the complete ONT sequencing workflow from sample to analysis.

Learning Objectives:

1. Learn the principles of Oxford Nanopore sequencing and its advantages.
2. Prepare and quality-check metagenomic DNA/RNA samples.
3.  Operate MinION/Flongle and monitor sequencing runs.
4.  Perform basecalling and convert signals to sequences.
5. Conduct taxonomic classification, assembly, and functional annotation.
6. Troubleshoot and optimize sequencing and analysis steps.

Expected Outcomes:

• • Proficiency in the full ONT metagenomic pipeline.
  •  Ability to analyze and evaluate sequencing data quality.
  • Confidence to design and execute a pilot ONT metagenomic study.

Speaker Biography:

Dr. Liliane Okdah is a Senior Genomics and Molecular Microbiology Applications Scientist with extensive international experience spanning industry, clinical research, and academia. She currently supports advanced sequencing technologies across the EMEA region, with a strong focus on next-generation sequencing platforms, antimicrobial resistance surveillance, and laboratory workflow optimization. 

Dr. Okdah holds a PhD in Human Pathology and Infectious Diseases from Aix-Marseille University and has contributed to over 20 peer-reviewed publications in leading scientific journals. Her career combines deep technical expertise with practical field application, including roles at Illumina, Oxford Nanopore Technologies, and major research institutions in Saudi Arabia. She is recognized for her ability to                                                                translate  complex genomic technologies into actionable solutions, as well as for her leadership in training, scientific communication, and                                                       cross- functional collaboration. 

Ali Yasser is a Field Application Specialist with practical expertise in next-generation sequencing (NGS) and third-generation sequencing technologies, particularly Oxford Nanopore platforms. He has hands-on experience in implementing sequencing workflows, supporting both research and clinical applications, and troubleshooting complex technical issues to optimize performance and data quality. 

Currently working in application support and sales, Ali combines strong technical knowledge with client-facing experience, delivering training, system validation, and post-installation support. His background includes working with multiple sequencing and quality control platforms, alongside skills in bioinformatics and laboratory best practices (GCP/GMP). He has contributed to successful sequencing projects                                                 and workshops across academic and research institutions, supporting researchers from sample preparation through to data analysis.